Tool Development for Evolutionary Analyses of Genomes

Warning: file_get_contents(http://www.guy-leonard.co.uk/tools.txt) [function.file-get-contents]: failed to open stream: HTTP request failed! HTTP/1.1 404 Not Found in /mnt/webdata1/webs/projects.exeter.ac.uk/docs/ceem/ceem_staff_tom_tools.html on line 35

• REFGEN an online sequence manager for easy control of database sequences enabling renaming of long sequence labels prior to phylogenetic analyses which almost always requires short sequence names
• TREENAMER an online tree label manger that will illustrate tree labels given the REFGEN output file. Phylogenetic trees for publication almost always require species names and/or database accession numbers; this program enables the user to manage this information.
• easyRAx a simple script that wraps around the command line program RAxML. RAxML is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. RAxML is available here.
• Species Autocorrect: 839 taxa sampled from NCBI, DOE JGI and BROAD compiled into a MS Word AutoCorrect file in order to 'automagically' italicise taxon names.
• FDF BLAST (link - coming soon)

Gene and Genome databases

• Hyphochytrium EST database (link - coming soon)
• Heteromita Genome Sequence Survey database (link - coming soon)